The publications listed are based in whole or in part on research conducted at HIRS. If you have HIRS related publications that are not listed below, please email the details to science.stations@uq.edu.au so they may be added.

  • 2017

    Castro-Sanguino, C; Lovelock, C; Mumby, PJ (2017) Factors affecting tolerance to herbivory in a calcifying alga on coral reefs. Marine Biology, 164(2): 37.

    Del Monaco, C; Hay, ME; Gartrell, P; Mumby, PJ; Diaz-Pulido, G (2017) Effects of ocean acidification on the potency of macroalgal allelopathy to a common coral. Scientific Reports, 7: 41053.

    Flower, J; Ortiz, JC; Chollett, I; Abdullah, S; Castro-Sanguino, C; Hock, K; Lam, V; Mumby, PJ (2017) Interpreting coral reef monitoring data: A guide for improved management decisions. Ecological Indicators, 72: 848-869.

    Gomez-Lemos, LA; Diaz-Pulido, G (2017) Crustose coralline algae and associated microbial biofilms deter seaweed settlement on coral reefs. Coral Reefs, 1-10.

    Lichtenberg, M; Brodersen, KE; Kuhl, M (2017) Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light. bioRxiv, 103705.

    Wee, NQ; Cribb, TH; Bray, RA; Cutmore, SC (2017) Two known and one new species of Proctoeces from Australian teleosts: Variable host-specificity for closely related species identified through multi-locus molecular data. Parasitology International, 66(2): 16-26.

  • 2016

    Agbesi, MP; Naylor, S; Perkins, E; Borsuk, HS; Sykes, D; Maclaine, JS; Wang, Z; Cox, JP (2016) Complex flow in the nasal region of guitarfishes. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 193: 52-63.

    Bainbridge, S; Gardner, S (2016) Comparison of human and camera visual acuity - setting the benchmark for shallow water autonomous imaging platforms. Journal of Marine Science and Engineering, 4(1): 17.

    Baird, ME; Cherukuru, N; Jones, E; Margvelashvili, N; Mongin, M; Oubelkheir, K; Ralph, PJ; Rizwi, F; Robson, BJ; Schroeder, T; Skerratt, J; Steven, ADL; Wild-Allen, KA (2016) Remote-sensing reflectance and true colour produced by a coupled hydrodynamic, optical, sediment, biogeochemical model of the Great Barrier Reef, Australia: Comparison with satellite data. Environmental Modelling & Software, 78: 79-96.

    Bray, RA; Cribb, TH; Littlewood, DT; Waeschenbach, A (2016) The molecular phylogeny of the digenean family Opecoelidae Ozaki, 1925 and the value of morphological characters, with the erection of a new subfamily. Folia Parasitologica, 63: 013.

    Castro-Sanguino, C; Lovelock, C; Mumby, PJ (2016) The effect of structurally complex corals and herbivory on the dynamics of Halimeda. Coral Reefs, 1-13.

    Correa, AM; Ainsworth, TD; Rosales, SM; Thurber, AR; Butler, CR; Thurber, RLV (2016) Viral outbreak in corals associated with an in situ bleaching event: atypical herpes-like viruses and a new megavirus infecting Symbiodinium. Frontiers in Microbiology, 7: 127.

    Cyronak, T; Eyre, BD (2016) The synergistic effects of ocean acidification and organic metabolism on calcium carbonate (CaCO3) dissolution in coral reef sediments. Marine Chemistry 183: 1-12.

    Day, RD; Mueller, F; Carseldine, L; Meyers-Cherry, N; Tibbetts, IR (2016) Ballistic Beloniformes attacking through Snell's Window. Journal of Fish Biology, 88: 727-734.

    Dechnik, B; Webster, J. M; Nothdurft, L; Webb, GE; Zhao, JX; Duce, S; Braga, JC; Harris, DL; Vila-Concejo, A; Puotinen, M (2016) Influence of hydrodynamic energy on Holocene reef flat accretion, Great Barrier Reef. Quaternary Research, doi:10.1016/j.yqres.2015.11.002

    Fang, JK; Mason, RA; Schönberg, CH; Hoegh‐Guldberg, O; Dove, S (2016) Studying interactions between excavating sponges and massive corals by the use of hybrid cores. Marine Ecology.

    Ganase, A; Bongaerts, P; Visser, PM; Dove, SG (2016) The effect of seasonal temperature extremes on sediment rejection in three scleractinian coral species. Coral Reefs, 35: 187-191.

    Gardner, SG; Nielsen, DA; Laczka, O; Shimmon, R; Beltran, VH; Ralph, PJ; Petrou, K (2016) Dimethylsulfoniopropionate, superoxide dismutase and glutathione as stress response indicators in three corals under short-term hyposalinity stress. Proceedings of the Royal Society B, 283(1824):20152418.

    Garren, M; Son, K; Tout, J; Seymour, JR; Stocker, R (2016) Temperature-induced behavioral switches in a bacterial coral pathogen. The ISME Journal, 10: 1363-1372.

    Gauthier, MEA; Watson, JR; Degnan, SM (2016) Draft genomes shed light on the dual bacterial symbiosis that dominates the microbiome of the coral reef sponge Amphimedon queenslandica. Frontiers in Marine Science, 3: 196.

    Gierz, SL; Gordon, BR; Leggat, W (2016) Integral light-harvesting complex expression in Symbiodinium within the coral Acropora aspera under thermal stress. Scientific Reports, 6.

    Gerlach, G; Atema, J; Raupach, M. J; Deister, F; Müller, A; Kingsford, MJ (2016) Cryptic species of cardinalfish with evidence for old and new divergence. Coral Reefs, 1-14.

    Hedley, JD; Roelfsema, CM; Chollett, I; Harborne, AR; Heron, SF; Weeks, S; Skirving, WJ; Strong, AE; Eakin, CM; Christensen, TRL; Ticzon, V; Bejerano, S; Mumby, PJ (2016) Remote sensing of coral reefs for monitoring and management: A review. Remote Sensing, 8: 118.

    Hillyer, KE (2016) Thermal stress and bleaching in the cnidarian-dinoflagellate symbiosis: The application of metabolomics. PhD Thesis, Victoria University of Wellington.

    Hillyer, KE; Dias, DA; Lutz, A; Wilkinson, SP; Roessner, U; Davy, SK (2016) Metabolite profiling of symbiont and host during thermal stress and bleaching in the coral Acropora aspera. Coral Reefs, 1-14.

    Hunter, JW; Jateff, E (2016) From Battleship to Breakwater: post‐military adaptive reuse of the Australian warship Protector. International Journal of Nautical Archaeology.

    Kocot, K (2016)  On 20 years of Lophotrochozoa. Organisms Diversity & Evolution, doi: 10.1007/s13127-015-0261-3.

    Kocot, KM; Struck, TH; Merkel, J; Waits, DS; Todt, C; Brannock, PM; Weese, DA; Cannon, JT; Moroz, LL; Lieb, B; Halanych, KM (2016) Phylogenomics of Lophotrochozoa with consideration of systematic error. Systematic Biology, syw079.

    Koren, K; Jakobsen, SL; Kühl, M (2016) In-vivo imaging of O2 dynamics on coral surfaces spray-painted with sensor nanoparticles. Sensors and Actuators B: Chemical.

    Lee, JJ; Cevasco, M; Morales, J; Billick, M; Fine, M; Levy, O (2016) Variation among the Marginopora vertebralis collected from the Great Barrier Reef, Australia.  The Journal of Foraminiferal Research, 46(2): 201-219.

    Lichtenberg, M; Larkum, AW; Kühl, M (2016). Photosynthetic acclimation of Symbiodinium in hospite depends on vertical position in the tissue of the scleractinian coral Montastrea curta. Frontiers in Microbiology, 7: 230.

    Lyndby, NH; Kühl, M; Wangpraseurt, D (2016) Heat generation and light scattering of green fluorescent protein-like pigments in coral tissue.Scientific Reports, 6.Madin, E (2016) Seeing fear from space. Wildlife Australia, 53: 44-45. 

    Mallet, M; Cravigan, L; Miljevic, B; Vaattovaara, P; Deschaseaux, E; Swan, H; Jone, G; Ristovski, Z (2016) Sea spray aerosol in the Great Barrier Reef and the presence of non‐volatile organics. Journal of Geophysical Research: Atmospheres, 121: 7088-7099.

    McDougall, C; Woodcroft, BJ; Degnan, BM (2016) The widespread prevalence and functional significance of silk-like structural proteins in metazoan biological materials. PloS one, 11(7): e0159128.

    McDuie, F; Congdon, BC (2016) Trans-equatorial migration and non-breeding habitat of tropical shearwaters: implications for modelling pelagic Important Bird Areas. Marine Ecology Progress Series, 550: 219-234.

    McGowan, HA; MacKellar, MC; Gray, MA (2016) Direct measurements of air‐sea CO2 exchange over a coral reef. Geophysical Research Letters. DOI: 10.1002/2016GL068772

    Miller, I; Forster, BC; Laffan, SW; Brander, RW (2016) Bidirectional reflectance of coral growth-forms. International Journal of Remote Sensing, 37: 1553-1567.

    Mongin, M; Baird, ME; Hadley, S; Lenton, A (2016) Optimising reef-scale CO2 removal by seaweed to buffer ocean acidification. Environmental Research Letters, 11: 034023.

    Mongin, M; Baird, ME; Tilbrook, B; Matear, RJ; Lenton, A; Herzfeld, M; Wild-Allen, K; Skerratt, J; Margvelashvili; Robson, BJ; Duarte, CM; Gustafsson, SM; Ralph, PJ; Steven, ADL (2016) The exposure of the Great Barrier Reef to ocean acidification. Nature Communications, 7: 10732.

    Nitschke, MR; Davy, SK; Ward, S (2016) Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment. Coral Reefs, 35: 335-344.

    Nolan, MJ; Cantacessi, C; Cutmore, SC; Cribb, TH; Miller, TL (2016) High-intensity cardiac infections of Phthinomita heinigerae n. sp.(Digenea: Aporocotylidae) in the orangelined cardinalfish, Taeniamia fucata (Cantor), off Heron Island on the Great Barrier Reef. Parasitology International.

    Ober, GT; Diaz-Pulido, G; Thornber, C (2016) Ocean acidification influences the biomass and diversity of reef-associated turf algal communities. Marine Biology, 163: 204.

    Palazzo, L; Wolfe, K; Byrne, M (2016) Discovery and description of Stichopus herrmanni juvenile nursery sites on Heron Reef, Great Barrier Reef. SPC Beche-de-mer Information Bulletin, 36: 36-40.

    Pichelin, S; Smales, LR; Cribb, TH (2016) A review of the genus Sclerocollum Schmidt & Paperna, 1978 (Acanthocephala: Cavisomidae) from rabbitfishes (Siganidae) in the Indian and Pacific Oceans. Systematic Parasitology, 93: 101-114.

    Raoult, V; David, PA; Dupont, SF; Mathewson, CP; O'Neill, SJ; Powell, NN; Williamson, JE (2016) GoPros™ as an underwater photogrammetry tool for citizen science. PeerJ 4:e1960; DOI 10.7717/peerj.1960

    Richards, ZT; Berry, O; van Oppen, MJ (2016) Cryptic genetic divergence within threatened species of Acropora coral from the Indian and Pacific Oceans. Conservation Genetics, doi: 10.1007/s10592-015-0807-0

    Ros, M; Pernice, M; Le Guillou, S; Doblin, MA; Schrameyer, V; Laczka, O (2016) Colorimetric detection of caspase 3 activity and reactive oxygen derivatives: potential early indicators of thermal stress in corals. Journal of Marine Biology, doi.org/10.1155/2016/6825949

    Rusli, MU; Booth, DT; Joseph, J (2016) Synchronous activity lowers the energetic cost of nest escape for sea turtle hatchlings. Journal of Experimental Biology, 219: 1505-1513.

    Sadler, J; Nguyen, AD; Leonard, ND; Webb, GE; Nothdurft, LD (2016) Acropora interbranch skeleton Sr/Ca ratios: Evaluation of a potential new high‐resolution paleothermometer. Paleoceanography, 31: 505-517.

    Sadler, J; Webb, GE; Leonard, ND; Nothdurft, LD; Clark, TR (2016) Reef core insights into mid‐Holocene water temperatures of the southern Great Barrier Reef. Paleoceanography.

    Schrameyer, V; Krämer, W; Hill, R; Jeans, J; Larkum, AW; Bischof, K; Campbell, DA; Ralph, PJ (2016) Under high light stress two Indo-Pacific coral species display differential photodamage and photorepair dynamics. Marine Biology, 163(8):1-13.

    Sebastian, P; Cumming, RL (2016) Three new species of Calyptotheca (Bryozoa: Lanceoporidae) from the Great Barrier Reef, tropical Australia. Zootaxa, 4079: 467-479.

    Shamsi, S; Suthar, J (2016) Occurrence of Terranova larval types (Nematoda: Anisakidae) in Australian marine fish with comments on their specific identities. PeerJ 4: e1722.

    Smit, H (2016) Two new species of the marine water mite family Pontarachnidae from Queensland, Australia (Acari: Hydrachnidia). Marine Biology Research, 12: 206-209.

    Sogabe, S; Nakanishi, N; Degnan, BM (2016) The ontogeny of choanocyte chambers during metamorphosis in the demosponge Amphimedon queenslandica. EvoDevo, 7: 6.

    Strotz, LC; Mamo, BL; Dominey-Howes, D (2016) Effects of cyclone-generated disturbance on a tropical reef foraminifera assemblage. Scientific Reports, 6.

    Swan, HB; Crough, RW; Vaattovaara, P; Jones, GB; Deschaseaux, ES; Eyre, BD; Miljevic, B; Ristovski, ZD (2016) Dimethyl sulfide and other biogenic volatile organic compound emissions from branching coral and reef seawater: potential sources of secondary aerosol over the Great Barrier Reef. Journal of Atmospheric Chemistry, 1-26.

    Tout, J (2016) Exploring the function and behaviour of natural populations of coral reef microbes. Doctoral dissertation, University of Technology Sydney.

    Trampe, E; Kühl, M (2016) Chlorophyll f distribution and dynamics in cyanobacterial beachrock biofilms. Journal of Phycology.

    Vidal-Ramirez, F; Dove, S (2016) Diurnal effects of Holothuria atra on seawater carbonate chemistry in a sedimentary environment. Journal of Experimental Marine Biology and Ecology, 474, 156-163.

    Williamson, JE; Byrnes, EE; Clark, JA; Connolly, DM; Schiller, SE; Thompson, JA; Tosetto, L; Martinelli, JC; Raoult, V (2016) Ecological impacts and management implications of reef walking on a tropical reef flat community. Marine Pollution Bulletin, doi: 10.1016/j.marpolbul.2016.10.069. 

    Wolfe, K; Byrne, M (2016) Population biology and recruitment of a vulnerable sea cucumber, Stichopus herrmanni, on a protected reef. Marine Ecology.

    Zimmermann, J; Wentrup, C; Sadowski, M; Blazejak, A; Gruber‐Vodicka, H; Kleiner, M; Ott, JA; Cronholm, B; De Witt, P; Erseus, C; Dubilier, N (2016) Closely coupled evolutionary history of ecto‐and endosymbionts from two distantly‐related animal phyla. Molecular Ecology. doi: 10.1111/mec.13554

  • 2015 

    Agbesi, MP; Naylor, S; Perkins, E; Borsuk, HS; Sykes, D; Maclaine, JS; Wang, Z; Cox, JP (2016) Complex flow in the nasal region of guitarfishes. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 193: 52-63.

    Albright, R; Benthuysen, J; Cantin, N; Caldeira, K; Anthony, K (2015) Coral reef metabolism and carbon chemistry dynamics of a coral reef flat. Geophysical Research Letters. 42, doi:10.1002/2015GL063488.

    Bender, D; Champ, CM; Kline, D; Diaz-Pulido, G; Dove, S (2015) Effects of “reduced” and “business-as-usual” CO2 emission scenarios on the algal territories of the Damselfish Pomacentrus wardi (Pomacentridae). PLOS ONE,10 (6).

    Bowen, J (2015) Coral Reefs in an Uncertain World: The Anthropocene Epoch. In The Coral Reef Era: From Discovery to Decline (pp. 177-180). Springer International Publishing.

    Bruce, NL; Cumming, RL (2015) A new genus of Stenetriidae Hansen, 1905 (Asellota: Isopoda: Crustacea) from the Great Barrier Reef, Australia and the southwestern Pacific. Zootaxa, 3941(4): 485-508.

    Carvalho, M­­C; Santos, IR; Maher, DT; Cyronak, T; McMahon, A; Schulz, KG; Eyre, BD (2015) Drivers of carbon isotopic fractionation in a coral reef lagoon: Predominance of demand over supply. Geochimica et Cosmochimica Acta, 153: 105-115.

    Clark, NJ; Clegg, SM (2015) The influence of vagrant hosts and weather patterns on the colonization and persistence of blood parasites in an island bird. Journal of Biogeography, 42(4): 641-651.

    Cravigan, LT (2015) Sources and composition of sub-200 nm sea spray aerosol inferred from volatility and hygroscopicity. Masters by Research thesis, Queensland University of Technology.

    Currey, LM; Heupel, MR; Simpfendorfer, CA; Williams, AJ (2015) Assessing environmental correlates of fish movement on a coral reef. Coral Reefs, 1-11.

    Diaz, PE; Bray, RA; Cutmore, SC; Ward, S; Cribb, TH (2015) A complex of species related to Paradiscogaster glebulae (Digenea: Faustulidae) in chaetodontid fishes (Teleostei: Perciformes) of the Great Barrier Reef. Parasitology International, 64(5): 421-428.

    Echenique-Subiabre, I; Villeneuve, A; Golubic, S; Turquet, J; Humbert, JF; Gugger, M (2015) Influence of local and global environmental parameters on the composition of cyanobacterial mats in a tropical lagoon. Microbial Ecology, 69(2): 234-244.

    Erler, DV; Wang, XT; Sigman, DM; Scheffers, SR; Shepherd, BO (2015) Controls on the nitrogen isotopic composition of shallow water corals across a tropical reef flat transect. Coral Reefs, 34(1): 329-338.

    Ganase, A; Bongaerts, P; Visser, PM; Dove, SG (2015) The effect of seasonal temperature extremes on sediment rejection in three scleractinian coral species. Coral Reefs, 1-5.

    Gauthier, A (2015) Analysis of silicatein gene expression and spicule formation in the demosponge Amphimedon queenslandica. PhD thesis, The University of Queensland.

    Hardesty, BD; Holdsworth, D; Revill, AT; Wilcox, C (2015) A biochemical approach for identifying plastics exposure in live wildlife. Methods in Ecology and Evolution, 6(1): 92-98.

    Hawkins, TD; Krueger, T; Wilkinson, SP; Fisher, PL; Davy, SK (2015) Antioxidant responses to heat and light stress differ with habitat in a common reef coral. Coral Reefs, 34: 1229-1241.

    Heupel, MR; Simpfendorfer, CA (2015) Long-term movement patterns of a coral reef predator. Coral Reefs, 34: 679-691.

    Hoeksema, BW; Bongaerts, P (2015) Mobility and self-righting by a free-living mushroom coral through pulsed inflation. Marine Biodiversity, 1-4.

    Hunter, JW; Jateff, E; Herath, N; van den Hengel, A (2015) Protector revealed: an initiative to archaeologically document, interpret and showcase an historic Australian warship with laser scanning technology.

    Kaniewska, P; Alon, S; Karako-Lampert, S; Hoegh-Guldberg, O; Levy, O (2015) Signaling cascades and the importance of moonlight in coral broadcast mass spawning. eLife, 4, e09991.

    Kearn, G; Whittington, I (2015) Sperm transfer in monogenean (platyhelminth) parasites. Acta Parasitologica, 60: 567-599.

    Kline, DI; Teneva, L; Hauri, C; Schneider, K; Miard, T; Chai, A; Marker, M; Dunbar, R; Caldeira, K; Lazar, B; Rivlin, T; Mitchell, BG; Dove, S; Hoegh-Guldberg, O (2015) Six month in situ high-resolution carbonate chemistry and temperature study on a coral reef flat reveals asynchronous pH and temperature anomalies. PLOS ONE, 10(6):10.1371

    Kroon, FJ; Hook, SE; Jones, D; Metcalfe, S; Henderson, B; Smith, R; Warne, MStJ; Turner, RD; McKeown, A; Westcott, DA (2015) Altered transcription levels of endocrine associated genes in two fisheries species collected from the Great Barrier Reef catchment and lagoon. Marine Environmental Research, 104: 51-61.

    Lapshin, G; Salih, A; Kolosov, P; Golovkina, M; Zavorotnyi, Y; Ivashina, T; Vinokurov, L; Bagratashvili, V; Savitsky, A (2015) Fluorescence color diversity of Great Barrier Reef corals. Journal of Innovative Optical Health Sciences, doi: 10.1142/S1793545815500285.

    Lawrence, SA; Davy, JE; Wilson, WH; Hoegh-Guldberg, O; Davy, SK (2015) Porites white patch syndrome: associated viruses and disease physiology. Coral Reefs, 34(1): 249-257.

    Leon, JX; Roelfsema, CM; Saunders, MI; Phinn, SR (2015) Measuring coral reef terrain roughness using ‘Structure-from-Motion’ close-range photogrammetry. Geomorphology, doi:10.1016/j.geomorph.2015.01.030

    Marshell, A; Mumby, PJ (2015) The role of surgeonfish (Acanthuridae) in maintaining algal turf biomass on coral reefs. Journal of Experimental Marine Biology and Ecology, 473: 152-160.

    Matley, JK; Heupel, MR; Simpfendorfer, CA (2015) Depth and space use of leopard coral grouper Plectropomus leopardus using passive acoustic tracking. Marine Ecology Progress Series, 521: 201-216.

    McDuie, F; Weeks, SJ; Miller, MG; Congdon, BC (2015) Breeding tropical shearwaters use distant foraging sites when self-provisioning. Marine Ornithology, 43: 123-129.

    Mendoza-Palmero, CA; Blasco-Costa, I; Scholz, T (2015) Molecular phylogeny of neotropical monogeneans (Platyhelminthes: Monogenea) from catfishes (Siluriformes). Parasites & Vectors, 8(1): 164.

    Murray, S; Momigliano, P; Heimann, K; Blair, D (2015) Molecular phylogenetics and morphology of Gambierdiscus yasumotoi from tropical eastern Australia. Harmful Algae, 39: 242-252.

    Nakanishi, N; Stoupin, D; Degnan, SM; Degnan, BM (2015) Sensory flask cells in sponge larvae regulate metamorphosis via calcium signaling. Integrative and Comparative Biology, doi: 10.1093/icb/icv014

    Nimbs, MJ; Willan, RC; Smith, SD (2015) Range extensions for heterobranch sea slugs (formerly opisthobranch) belonging to the families Diaphanidae, Plakobranchidae and Facelinidae on the eastern coast of Australia. Marine Biodiversity Records, 8, e76.

    Nitschke, MR; Davy, SK; Ward, S (2015) Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment. Coral Reefs, 1-10.

    O'Reilly, C; Santos, IR; Cyronak, T; McMahon, A; Maher, DT (2015) Nitrous oxide and methane dynamics in a coral reef lagoon driven by pore water exchange: Insights from automated high‐frequency observations. Geophysical Research Letters, 42: 2885-2892.

    Potvin, DA; Clegg, SM (2015) The relative roles of cultural drift and acoustic adaptation in shaping syllable repertoires of island bird populations change with time since colonization. Evolution, 69(2): 368-380.

    Prazeres, M; Uthicke, S; Pandolfi, JM (2015) Ocean acidification induces biochemical and morphological changes in the calcification process of large benthic foraminifera. Proceedings of the Royal Society of London B: Biological Sciences, 282: 20142782.

    Rogers, PC; Rogers, RW; Hedrich, AE; Moss, PT (2015). Lichen monitoring delineates biodiversity on a Great Barrier Reef coral cay. Forests, 6: 1557-1575.

    Streit, RP; Hoey, AS; Bellwood, DR (2015) Feeding characteristics reveal functional distinctions among browsing herbivorous fishes on coral reefs. Coral Reefs, 1-11.

    Swan, HB; Ivey, JP; Jones, GB; Eyre, BD (2015) The validation and measurement uncertainty of an automated gas chromatograph for marine studies of atmospheric dimethylsulfide. Analytical Methods, 7: 3893-3902.

    Tout, J; Jeffries, TC; Petrou, K; Tyson, GW; Webster, NS; Garren, M; Stocker, R; Ralph, PJ; Seymour, JR (2015) Chemotaxis by natural populations of coral reef bacteria. The ISME Journal, doi: 10.1038/ismej.2014.261

    Tout, J; Siboni, N; Messer, LF; Garren, M; Stocker, R; Webster, NS; Ralph, PJ; Seymour, JR (2015) Increased seawater temperature increases the abundance and alters the structure of natural Vibrio populations associated with the coral Pocillopora damicornis. Frontiers in Microbiology, 6: 432.

    Trieu, N; Cutmore, SC; Miller, TL; Cribb, TH (2015). A species pair of Bivesicula Yamaguti, 1934 (Trematoda: Bivesiculidae) in unrelated Great Barrier Reef fishes: implications for the basis of speciation in coral reef fish trematodes. Systematic Parasitology, 91(3): 231-239.

    van de Water, JA; Leggat, W; Bourne, DG; van Oppen, MJ; Willis, BL; Ainsworth, TD (2015) Elevated seawater temperatures have a limited impact on the coral immune response following physical damage. Hydrobiologia, doi: 10.1007/s10750-015-2243-z.

    Watson, C (2015) Seven new species of Paleanotus (Annelida: Chrysopetalidae) described from Lizard Island, Great Barrier Reef, and coral reefs of northern Australia and the Indo-Pacific: two cryptic species pairs revealed between western Pacific Ocean and the eastern Indian Ocean. Zootaxa, 4019: 707-732.

    Winkler, NS; Pandolfi, JM; Sampayo, EM (2015) Symbiodinium identity alters the temperature-dependent settlement behaviour of Acropora millepora coral larvae before the onset of symbiosis. Proceedings of the Royal Society of London B: Biological Sciences, 282: 20142260.

  • 2014

    Aguilera, F; McDougall, C; Degnan, BM (2014) Evolution of the tyrosinase gene family in bivalve molluscs: Independent expansion of the mantle gene repertoire. In: BIOMIN’12 International Symposium, Freiberg, Germany, (3855-3865).

    Anderson, KD; Pratchett, MS (2014) Variation in size-frequency distributions of branching corals between a tropical versus sub-tropical reef. Marine Ecology Progress Series, 502: 117-128.

    Bell, PR; Elmetri, I; Lapointe, BE (2014) Evidence of large-scale chronic eutrophication in the Great Barrier Reef: Quantification of chlorophyll a thresholds for sustaining coral reef communities. Ambio, 43: 361-376.

    Belton, GS; Reine, WF; Huisman, JM; Draisma, SG; Gurgel, D; Frederico, C (2014) Resolving phenotypic plasticity and species designation in the morphologically challenging Caulerpa racemosa–peltata complex (Chlorophyta, Caulerpaceae). Journal of Phycology, 50: 32-54.

    Bender, D (2014) The future of coral reef algae: how ocean acidification, elevated temperatures and nutrient enrichment affect algae. PhD Thesis, School of Biological Sciences, The University of Queensland.

    Bender, D; Diaz‐Pulido, G; Dove, S (2014) The impact of CO2 emission scenarios and nutrient enrichment on a common coral reef macroalga is modified by temporal effects. Journal of Phycology, 50: 203-215.

    Booth, DT (2014) Kinematics of swimming and thrust production during powerstroking bouts of the swim frenzy in green turtle hatchlings. Biology Open, 3: 887-894.

    Borrego-Acevedo, R; Roelfsema, CM; Phinn, SR; Grinham, AR (2014) Predicting distribution of microphytobenthos abundance on a reef platform by combining in situ underwater spectrometry and pigment analysis. Remote Sensing Letters, 5: 461-470.

    Bray, RA; Cribb, TH (2014) Are cryptic species a problem for parasitological biological tagging for stock identification of aquatic organisms? Parasitology, 1-9.

    Bray, RA; Cribb, TH; Waeschenbach, A; Littlewood, DTJ (2014) Molecular evidence that the genus Cadenatella Dollfus, 1946 (Digenea: Plagiorchiida) belongs in the superfamily Haploporoidea Nicoll, 1914. Systematic Parasitology, 89: 15-21.

    Brodersen, KE; Lichtenberg, M; Ralph, PJ; Kühl, M; Wangpraseurt, D (2014) Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals. Journal of the Royal Society Interface, 11: 1742-5662.

    Bruce, AJ (2014) Periclimenaeus denticulodigitus sp nov (Crustacea: Decapoda: Palaemonidae: Pontoniinae), from Heron Island, Queensland, Australia. Zootaxa, 3753: 71-78.

    Budd, A; McDougall, C; Green, K; Degnan, BM (2014) Control of shell pigmentation by secretory tubules in the abalone mantle. Frontiers in Zoology, 11: 62.

    Ceccarelli, DM; Frisch, AJ; Graham, NA; Ayling, AM; Beger, M (2014) Habitat partitioning and vulnerability of sharks in the Great Barrier Reef Marine Park. Reviews in Fish Biology and Fisheries, 24: 169-197.

    Cheney, KL; Cortesi, F; How, MJ; Wilson, NG; Blomberg, SP; Winters, AE; Umanzör, S; Marshall, NJ (2014) Conspicuous visual signals do not coevolve with increased body size in marine sea slugs. Journal of Evolutionary Biology, 27: 676-687.

    Clark, NJ; Adlard, RD; Clegg, SM (2014) First evidence of avian malaria in Capricorn Silvereyes (Zosterops lateralis chlorocephalus) on Heron Island. The Sunbird: Journal of the Queensland Ornithological Society, 44: 1-11.

    Couturier, LIE; Dudgeon, CL; Pollock, KH; Jaine, FRA; Bennett, MB; Townsend, KA; Weeeks, SJ; Richardson, AJ (2014) Population dynamics of the reef manta ray Manta alfredi in eastern Australia. Coral Reefs, 33: 329-342.

    Crandall, ED; Treml, EA; Liggins, L; Gleeson, L; Yasuda, N; Barber, PH; Wörheide, G; Riginos, C (2014) Return of the ghosts of dispersal past: historical spread and contemporary gene flow in the blue sea star Linckia laevigata. Bulletin of Marine Science, 90(1): 399-425.

    Cribb, TH; Adlard, RD; Bray, RA; Sasal, P; Cutmore, SC (2014) Biogeography of tropical Indo-West Pacific parasites: A cryptic species of Transversotrema and evidence for rarity of Transversotrematidae (Trematoda) in French Polynesia. Parasitology International, 63 (2): 285-294.

    Cribb, TH; Bott, NJ; Bray, RA; McNamara, MK; Miller, TL; Nolan, MJ; Cutmore, SC (2014) Trematodes of the Great Barrier Reef, Australia: emerging patterns of diversity and richness in coral reef fishes. International Journal for Parasitology. 44: 929.

    Currey, LM; Heupel, MR; Simpfendorfer, CA; Williams, AJ (2014) Sedentary or mobile? Variability in space and depth use of an exploited coral reef fish. Marine Biology, 161: 2155–2166.

    Cyronak, T; Santos, IR; Erler, DV; Maher, DT; Eyre, BD (2014) Drivers of pCO2 variability in two contrasting coral reef lagoons: The influence of submarine groundwater discharge. Global Biogeochemical Cycles, 28: 398-414.

    Cyronak, T; Schulz, KG; Santos, IR; Eyre BD (2014) Enhanced acidification of global coral reefs driven by regional biogeochemical feedbacks, Geophysical Research Letters, 41: 5538–5546.

    Deschaseaux, ES; Jones, GB; Deseo, MA; Shepherd, KM; Kiene, RP; Swan, HB; Harrison, PL; Eyre, BD (2014) Effects of environmental factors on dimethylated sulfur compounds and their potential role in the antioxidant system of the coral holobiont. Limnology and Oceanography, 59: 758-768.

    Deschaseaux, ESM; Kiene, RP; Jones, GB; Deseo, MA; Swan, HB; Oswald, L; Eyre, BD (2014) Dimethylsulphoxide (DMSO) in biological samples: A comparison of the TiCl3 and NaBH4 reduction methods using headspace analysis. Marine Chemistry, 164: 9–15.

    Erler, DV; Santos, IR; Eyre, BD (2014). Inorganic nitrogen transformations within permeable carbonate sands. Continental Shelf Research, 77: 69-80.

    Erler, DV; Wang, XT; Sigman, DM; Scheffers, SR; Shepherd, BO (2014) Controls on the nitrogen isotopic composition of shallow water corals across a tropical reef flat transect. Coral Reefs, doi: 10.1007/s00338-014-1215-5.

    Eslick, EM; Beilby, MJ; Moon, AR (2014) A study of the native cell wall structures of the marine alga Ventricaria ventricosa (Siphonocladales, Chlorophyceae) using atomic force microscopy. Microscopy, dft083.

    Fang, JKH; Schönberg, CHL; Mello-Athayde, MA; Hoegh-Guldberg, O; Dove, S (2014) Effects of ocean warming and acidification on the energy budget of an excavating sponge. Global Change Biology, 20: 1043-1054.

    Garren, M; Son, K; Raina, J-B; Rusconi, R; Menolascina, F; Shapiro, OH; Tout, J; Bourne, DG; Seymour, JR; Stocker, R (2014) A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals. ISME, 8: 999-1007.

    Hawkins, TD; Krueger, T; Becker, S; Fisher, PL; Davy, SK (2014) Differential nitric oxide synthesis and host apoptotic events correlate with bleaching susceptibility in reef corals. Coral Reefs, 33: 141-153.

    Hechinger, RF; Miura, O (2014). Two 'new' renicolid trematodes (Trematoda: Digenea: Renicolidae) from the California horn snail, Cerithidea californica (Haldeman, 1840) (Gastropoda: Potamididae). Zootaxa, 3784: 559-574.

    Heiniger, H; Adlard, RD (2014) Relatedness of novel species of Myxidium Butschli, 1882, Zschokkella Auerbach, 1910 and Ellipsomyxa Koie, 2003 (Myxosporea: Bivalvulida) from the gall bladders of marine fishes (Teleostei) from Australian waters. Systematic Parasitology, 87: 47-72.

    Heupel, MR; Simpfendorfer, CA (2014) Importance of environmental and biological drivers in the presence and space use of a reef‑associated shark. Marine Ecology Progress Series, 496: 47-57.

    Hibino, Y; Todd, PA; Yang, S-y; Benayahu, Y; Reimer, JD (2014) Molecular and morphological evidence for conspecificity of two common Indo-Pacific species of Palythoa (Cnidaria: Anthozoa). Hydrobiologia, 733: 31-43.

    Hoegh-Guldberg, O (2014) Coral reef sustainability through adaptation: glimmer of hope or persistent mirage? Current Opinion in Environmental Sustainability, 7: 127–133.

    Jeans, J; Szabó, M; Campbell, DA; Larkum, AWD; Ralph, PJ; Hill, R (2014) Thermal bleaching induced changes in Photosystem II function not reflected by changes in Photosystem II protein content of Stylophora pistillata. Coral Reefs, 33: 131-139.

    Jones, GB; Fischer, E; Deschaseaux, ESM; Harrison, PL (2014) The effect of coral bleaching on the cellular concentration of dimethylsulphoniopropionate in reef corals. Journal of Experimental Marine Biology and Ecology, 460: 19-31.

    Kaniewska, P; Anthony, KRN; Sampayo, EM; Campbell, PR; Hoegh-Guldberg, O (2014) Implications of geometric plasticity for maximizing photosynthesis in branching corals. Marine Biology, 161: 313-328.

    Kingsford, MJ; Finn, MD; O’Callaghan, MD; Atema, J; Gerlach, G (2014) Planktonic larval duration, age and growth of Ostorhinchus doederleini (Pisces: Apogonidae) on the southern Great Barrier Reef, Australia. Marine Biology, 161: 245-259.

    Kraft, GT; Saunders, GW (2014) Crebradomus and Dissimularia, new genera in the family Chondrymeniaceae (Gigartinales, Rhodophyta) from the central, southern and western Pacific Ocean. Phycologia, 53: 146-166.

    Krüger, T (2014) Symbiont diversity and coral bleaching: An antioxidant view on thermal stress. PhD Thesis, Victoria University of Wellington.

    Lawrence, SA; Davy, JE; Wilson, WH; Hoegh-Guldberg, O; Davy, SK (2014) Porites white patch syndrome: associated viruses and disease physiology. Coral Reefs, 33: 687-691.

    Leiper, IA; Phinn, SR; Roelfsema, CM; Joyce, KE; Dekker, AG (2014) Mapping coral reef benthos, substrates, and bathymetry, using Compact Airborne Spectrographic Imager (CASI) data. Remote Sensing, 6: 6423-6445.

    Leveelahti, L; Rytkönen, KT; Renshaw, GM; Nikinmaa, M (2014) Revisiting redox-active antioxidant defenses in response to hypoxic challenge in both hypoxia-tolerant and hypoxia-sensitive fish species. Fish Physiology and Biochemistry, 40: 183-191.

    MacLeod,ID; Jateff, E; Hunter III, JW (2016) Corrosion on a wrecked colonial warship: HMCS Protector 1882-1944. Corrosion and Materials, 39: 52-56.

    McNamara, MKA; Miller, TL; Cribb, TH (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44: 37-48.

    Mongin, M; Baird, M (2014) The interacting effects of photosynthesis, calcification and water circulation on carbon chemistry variability on a coral reef flat: A modelling study. Ecological Modelling, 284: 19-34.

    Mumby, PJ; van Woesik, R (2014) Consequences of ecological, evolutionary and biogeochemical uncertainty for coral reef responses to climatic stress. Current Biology, 24: R413-R423.

    Murray, S; Momigliano, P; Kirsten Heimann, K; Blair, D (2014) Molecular phylogenetics and morphology of Gambierdiscus yasumotoi from tropical eastern Australia. Harmful Algae, 39: 242–252.

    Nakanishi, N; Sogabe, S; Degnan, BM (2014) Evolutionary origin of gastrulation: insights from sponge development. BMC Biology, 12: 26.

    Nitschke, MR; Davy, SK; Cribb, TH; Ward, S (2014) The effect of elevated temperature and substrate on free-living Symbiodinium cultures. Coral Reefs, doi: 10.1007/s00338-014-1220-8.

    Ogawa, DR (2014) The effects of climate change on the Acropora aspera holobiont. PhD thesis, James Cook University.

    Ordoñez, A; Doropoulos, C; Diaz-Pulido, G (2014) Effects of ocean acidification on population dynamics and community structure of crustose coralline algae. The Biological Bulletin, 226: 255-268.

    Orelis-Ribeiro, R; Arias, CR; Halanych, KM; Cribb, TH; Bullard, SA (2014) Diversity and ancestry of flatworms infecting blood of nontetrapod Craniates "fishes", Eds: Rollinson, D; Stothard, JR, in: Advances in Parasitology, 85: 1-64.

    Page, G; Bainbridge, S; Gardner, S; Hahn, S (2014) Development of a coral reef observing system using 802.11 wireless at Heron Island, Great Barrier Reef. In OCEANS 2014-TAIPEI (pp. 1-7). IEEE.

    Paul, R; Jinkerson, RE; Buss, K; Steel, J; Mohr, R; Hess, WR; Chen, M; Fromme, P (2014) Draft genome sequence of the filamentous cyanobacterium Leptolyngbya sp. strain Heron Island J, exhibiting chromatic acclimation. Genome Announcements, 2: e01166-13.

    Pernice, M; Dunn, SR; Tonk, L; Dove, S; Domart‐Coulon, I; Hoppe, P; Schintlmeister, A; Wagner, M; Meibom, A (2014) A nanosims study of dinoflagellate functional diversity in reef‐building corals. Environmental Microbiology.

    Petrou, K; Trimborn, S; Kuhl, M; Ralph, PJ (2014) Desiccation stress in two intertidal beachrock biofilms. Marine Biology, 161: 1765-1773.

    Phillott, AD; Parmenter, CJ (2014) Fungal colonization of green sea turtle (Chelonia mydas) nests is unlikely to affect hatchling condition. Herpetological Conservation and Biology, 9: 297-301.

    Pisapia, C; Pratchett, MS (2014) Spatial variation in background mortality among dominant coral taxa on Australia's Great Barrier Reef. PLOS ONE, 9: e100969.

    Pontasch, S; Scott, A; Hill, R; Bridge, T; Fisher, PL; Davy, SK (2014) Symbiodinium diversity in the sea anemone Entacmaea quadricolor on the east Australian coast. Coral Reefs, 33:537–542.

    Rafferty, AR; Reina, RD (2014) The influence of temperature on embryonic developmental arrest in marine and freshwater turtles. Journal of Experimental Marine Biology and Ecology, 450: 91-97.

    Read, TC; Wantiez, L; Werry, JM; Farman, R; Petro, G; Limpus, CJ (2014) Migrations of green turtles (Chelonia mydas) between nesting and foraging grounds across the Coral Sea. PLOS ONE, 9: e100083.

    Reyes-Nivia, C; Diaz-Pulido, G; Dove, S (2014) Relative roles of endolithic algae and carbonate chemistry variability in the skeletal dissolution of crustose coralline algae. Biogeosciences Discussions, 11: 2993-3021.

    Rummer, JL; Couturier, CS; Stecyk, JA; Gardiner, NM; Kinch, JP; Nilsson, GE; Munday, PL (2014) Life on the edge: thermal optima for aerobic scope of equatorial reef fishes are close to current day temperatures. Global Change Biology, 20: 1055-1066.

    Sadler, J; Webb, GE; Nothdurft, LD (2014) Structure and palaeoenvironmental implications of inter-branch coenosteum-rich skeleton in corymbose Acropora species. Coral Reefs, doi: 10.1007/s00338-014-1228-0.

    Sakanishi, K; Itoh, S; Sugiyama, R; Nishimura, S; Kakeya, H; Iwabuchi, Y; Kanoh, N (2014) Total synthesis of the proposed structure of Heronamide C. European Journal of Organic Chemistry, 2014: 1376-1380.

    Schmidt, J; Khalil, Z; Capon, RJ; Stark, CB (2014) Heronapyrrole D: A case of co-inspiration of natural product biosynthesis, total synthesis and biodiscovery. Beilstein Journal of Organic Chemistry, 10: 1228-1232.

    Searle, EL; Cutmore, SC; Cribb, TH (2014) Monorchiid trematodes of the painted sweetlips, Diagramma labiosum (Perciformes: Haemulidae), from the southern Great Barrier Reef, including a new genus and three new species. Systematic Parasitology 88: 195-211.

    Sims, CA; Riginos, C; Blomberg, SP; Huelsken, T; Drew, J; Grutter, AS (2014) Cleaning up the biogeography of Labroides dimidiatus using phylogenetics and morphometrics. Coral Reefs, 33: 223-233.

    Sinutok, S; Hill, R; Kuhl, M; Doblin, MA; Ralph, PJ (2014) Ocean acidification and warming alter photosynthesis and calcification of the symbiont-bearing foraminifera Marginopora vertebralis. Marine Biology, 161: 2143-2154.

    Smales, LR (2014) The genus Rhadinorhynchus (Acanthocephala: Rhadinorhynchidae) from marine fish in Australia with the description of four new species. Acta Parasitologica, 59: 721-736.

    Sun, ZM; Hanyuda, T; Kurihara, A; Millar, AJ; Gurgel, CFD; Kawai, H (2014) Four newly recorded species of the calcified marine brown macroalgal genus Padina (Dictyotales, Phaeophyceae) for Australia. Australian Systematic Botany, 26: 448-465.

    Sweet, MJ (2014) Symbiodinium diversity within Acropora muricata and the surrounding environment. Marine Ecology, 35: 343-353.

    Szabó, M; Wangpraseurt, D; Tamburic, B; Larkum, AWD; Schreiber, U; Suggett, DJ; Kühl, M; Ralph, PJ (2014) Effective light absorption and absolute electron transport rates in the coral Pocillopora damicornis. Plant Physiology and Biochemistry, 83: 159-167.

    Tout, J; Jeffries, TC; Webster, NS; Stocker, R; Ralph, PJ; Seymour, JR (2014) Variability in microbial community composition and function between different niches within a coral reef. Microbial Ecology, 67: 540-552.

    Ueda, N; Degnan, SM (2014) Nitric oxide is not a negative regulator of metamorphic induction in the abalone Haliotis asinina. Marine Molecular Biology and Ecology, 1: 21.

    Uthicke, S; Furnas, M; Lønborg, C (2014) Coral reefs on the edge? Carbon chemistry on inshore reefs of the Great Barrier Reef. PLOS ONE, 9: e109092.

    Wangpraseurt, D; Kühl, M (2014) Direct and diffuse light propagation through coral tissue. In SPIE BiOS (pp. 894117-894117). International Society for Optics and Photonics.

    Wangpraseurt, D; Larkum, AWD; Franklin, J; Szabó, M; Ralph, PJ; Kühl, M (2014) Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals. Journal of Experimental Biology, 217: 489-498.

    Wangpraseurt, D; Polerecky, L; Larkum, AW; Ralph, PJ; Nielsen, DA; Pernice, M; Kühl, M (2014) The in situ light microenvironment of corals. Limnology and Oceanography, 59: 917-926.

    Watson, JR; Brennan, TCR; Degnan, BM; Degnan, SM; Kromer, JO (2014) Analysis of the biomass composition of the demosponge Amphimedon queenslandica on Heron Island Reef, Australia. Marine Drugs, 12: 3733-3753.

    Wentrup, C; Williams, C (2014) 6th Heron Island Conference on Reactive Intermediates and Unusual Molecules. Australian Journal of Chemistry, 67: 317-319.

  • 2013

    Anthony, KRN; Diaz-Pulido, G; Verlinden, N; Tilbrook, B; Andersson, AJ (2013) Benthic buffers and boosters of ocean acidification on coral reefs. Biogeosciences, 10: 4897-4909.

    Behrendt, L; Staal, M; Cristescu, SM; Harren, FJ; Schliep, M; Larkum, AW; Kühl, M (2013) Reactive oxygen production induced by near-infrared radiation in three strains of the Chl d-containing cyanobacterium Acaryochloris marina. F1000Research, 2.

    Bellantuono, AJ (2013) Acclimatization of the tropical reef coral Acropora millepora to hyperthermal stress. PhD Thesis Florida International University.

    Bhagooli, R (2013) Inhibition of Calvin-Benson cycle suppresses the repair of photosystem II in Symbiodinium: implications for coral bleaching. Hydrobiologia, 714: 183-190.

    Booth, DT; Feeney, R; Shibata, Y (2013) Nest and maternal origin can influence morphology and locomotor performance of hatchling green turtles (Chelonia mydas) incubated in field nests. Marine Biology, 160(1): 127-137.

    Bott, NJ; Miller, TL; Cribb, TH (2013) Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112(7): 2561-2584

    Curtis, LM; Grutter, AS; Smit, NJ; Davies, AJ (2013) Gnathia aureamaculosa, a likely definitive host of Haemogregarina balistapi and potential vector for Haemogregarina bigemina between fishes of the Great Barrier Reef, Australia. International Journal for Parasitology, 43: 361-370.

    Cyronak, T (2013) The changing carbonate chemistry of coral reefs: ocean acidification, submarine groundwater discharge, and calcium carbonate (CaCO3) sediment dissolution. PhD thesis, Southern Cross University, Lismore, NSW.

    Cyronak, T; Santos, IR; Eyre, BD (2013) Permeable coral reef sediment dissolution driven by elevated pCO2 and pore water advection. Geophysical Research Letters, 40: 4876–4881.

    Cyronak, T; Santos, IR; McMahon, A; Eyre, BD (2013) Carbon cycling hysteresis in permeable carbonate sands over a diel cycle: Implications for ocean acidification. Limnology and Oceanography, 58: 131-143

    Dalton, SJ; Roff, G (2013) Spatial and temporal patterns of eastern Australia subtropical coral communities. PLOS ONE, 8: e75873

    Dennison, W; Oliver, P (2013) Studying nature in situ: Immersive education for better integrated water management. Journal of Contemporary Water Research & Education, 150: 26-33.

    Deschaseaux, ESM (2013) Dimethylated sulphur compounds in Acropora corals: antioxidant response and implications for climate regulation. PhD thesis, Southern Cross University, Lismore, NSW.

    Deschaseaux, ES; Deseo, MA; Shepherd, KM; Jones, GB; Harrison, PL (2013) Air blasting as the optimal approach for the extraction of antioxidants in coral tissue. Journal of Experimental Marine Biology and Ecology, 448: 146-148.

    Diaz, PE; Cribb, TH (2013) Paradiscogaster leichhardti sp. nov. (Digenea: Faustulidae) in Chaetodontoplus meredithi (Perciformes: Pomacanthidae) from Heron Island, Great Barrier Reef. Memoirs of the Queensland Museum, 58: 49-53.

    Doropoulos, C; Diaz-Pulido, G (2013) High CO2 reduces the settlement of a spawning coral on three common species of crustose coralline algae. Marine Ecology Progress Series, 475: 93-99.

    Eyre, BD; Santos, IR; Maher, DT (2013) Seasonal, daily and diel N-2 effluxes in permeable carbonate sediments. Biogeosciences, 10: 2601-2615.

    Fang, JK; Mello‐Athayde, MA; Schönberg, CH; Kline, DI; Hoegh‐Guldberg, O; Dove, S (2013) Sponge biomass and bioerosion rates increase under ocean warming and acidification. Global Change Biology, 19: 3581-3591.

    Fine, M; Sabbah, S; Shashar, N; Hoegh-Guldberg, O (2013) Light from down under. Journal of Experimental Biology, 216: 4341-4346.

    Granados-Cifuentes, C; Bellantuono, AJ; Ridgway, T; Hoegh-Guldberg, O; Rodriguez-Lanetty, M (2013) High natural gene expression variation in the reef-building coral Acropora millepora: potential for acclimative and adaptive plasticity. BMC Genomics, 14: 10.1186.

    Hawkins, TD (2013) Bleaching of the Cnidarian-Dinoflagellate symbiosis: aspects of innate immunity and the role of nitric oxide. PhD Thesis, Victoria University of Wellington.

    Heiniger, H; Adlard, RD (2013) Molecular identification of cryptic species of Ceratomyxa Thélohan, 1892 (Myxosporea: Bivalvulida) including the description of eight novel species from apogonid fishes (Perciformes: Apogonidae) from Australian waters. Acta Parasitologica, 58(3): 342-360.

    Huelsken, T; Keyse, J; Liggins, L; Penny, S; Treml, EA; Riginos, C (2013) A novel widespread cryptic species and phylogeographic patterns within several Giant Clam species (Cardiidae: Tridacna) from the Indo-Pacific Ocean. PLOS ONE 8(11): e80858.

    Joyce, KE; Phinn, SR (2013) Spectral index development for mapping live coral cover. Journal of Applied Remote Sensing, 7 10.1117.

    Joyce, KE; Phinn, SR; Roelfsema, CM (2013) Live coral cover index testing and application with hyperspectral airborne image data. Remote Sensing, 5: 6116-6137.

    Kraemer, WE; Schrameyer, V; Hill, R; Ralph, PJ; Bischof, K (2013) PSII activity and pigment dynamics of Symbiodinium in two Indo-Pacific corals exposed to short-term high-light stress. Marine Biology (Berlin), 160: 563-577.

    Lloyd, AJ (2013) Assessing the risk of ocean acidification for scleractinian corals on the Great Barrier Reef. PhD Thesis, The University of Technology Sydney.

    MacKellar, MC; McGowan, HA; Phinn, SR (2013) An observational heat budget analysis of a coral reef, Heron Reef, Great Barrier Reef, Australia. Journal of Geophysical Research-Atmospheres, 118(6): 2547-2559.

    MacKellar, MC; McGowan, HA; Phinn, SR; Soderholm, JS (2013) Observations of surface energy fluxes and boundary-layer structure over Heron Reef, Great Barrier Reef, Australia. Boundary-Layer Meteorology, 146(2): 319-340.

    McDuie, F; Goulding, W; Peck, DR; Congdon, BC (2013) Divergence in chick developmental patterns among wedge-tailed shearwater populations. Marine Ecology Progress Series, 485: 275-285.

    McMahon, A; Santos, IR; Cyronak, T; Eyre, BD (2013) Hysteresis between coral reef calcification and the seawater aragonite saturation state. Geophysical Research Letters, 40: 4675-4679.

    Meyer, E; Agnew, LR (2013) Southerly range extension for the mourning gecko (Lepidodactylus lugubris) on the Australian mainland. Queensland Naturalist, 51: 5-7.

    Miller, TL; Cribb, TH (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86: 101-112.

    Ogawa, D; Bobeszko, T; Ainsworth, T; Leggat, W (2013) The combined effects of temperature and CO2 lead to altered gene expression in Acropora aspera. Coral Reefs, 32: 895-907.

    Potvin, DA (2013) Larger body size on islands affects silvereye Zosterops lateralis song and call frequency. Journal of Avian Biology, 44: 221-225.

    Rafferty, AR; Evans, RG; Scheelings, TF; Reina RD (2013) Limited oxygen availability in utero may constrain the evolution of live birth in reptiles. American Naturalist, 181(2): 245-253.

    Reyes-Nivia, C; Diaz-Pulido, G; Kline, D; Hoegh-Guldberg, O; Dove, S (2013) Ocean acidification and warming scenarios increase microbioerosion of coral skeletons. Global Change Biology, 19:1919-1929.

    Reymond, CE; Lloyd, A; Kline, DI; Dove, SG; Pandolfi, JM (2013) Decline in growth of foraminifer Marginopora rossi under eutrophication and ocean acidification scenarios. Global Change Biology, 19(1): 291-302.

    Roelfsema, C; Phinn, S; Jupiter, S; Comley, J; Albert, S (2013) Mapping coral reefs at reef to reef-system scales, 10s–1000s km2, using object-based image analysis. International Journal of Remote Sensing, 34: 6367-6388.

    Rosic, NN; Leggat, W; Kaniewska, P; Dove, S; Hoegh-Guldberg, O (2013) New-old hemoglobin-like proteins of symbiotic dinoflagellates. Ecology and Evolution, 3 (4): 822-834.

    Scott, A; Harrison, PL; Brooks, LO (2013) Reduced salinity decreases the fertilization success and larval survival of two scleractinian coral species. Marine Environmental Research, 92: 10-14.

    Sinutok, S (2013) Interactive effects of ocean acidification and warming on sediment-dwelling marine calcifiers. PhD Thesis, University of Technology Sydney.

    Sinutok, S; Hill, R; Doblin, MA; Ralph, PJ (2013) Diurnal photosynthetic response of the motile symbiotic benthic foraminiferan Marginopora vertebralis. Marine Ecology Progress Series, 478: 127-138.

    Smith, EG; D'Angelo, C; Salih, A; Wiedenmann, J (2013) Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae. Coral Reefs, 32: 463-474.

    Stepien, A (2013) A new species of Numbakullidae Gutu & Heard, 2002 (Tanaidacea, Peracarida, Crustacea) from the Great Barrier Reef, Australia. Zookeys, 337: 35-47.

    Stepien, A; Blazewicz-Paszkowycz, M (2013) Four new species and two new genera of Metapseudidae (Crustacea: Tanaidacea: Apseudomorpha) from Australian coral reefs. Zootaxa, 3717: 559-592.

    Ueda, N; Degnan, SM (2013) Nitric oxide acts as a positive regulator to induce metamorphosis of the ascidian Herdmania momus. PLOS ONE, 8(9): e72797.

    Vaattovaara, P; Swan, HB; Jones, GB; Deschaseaux, E; Miljevic, B; Laaksonen, A; Ristovski, ZD (2013) The contribution of sulfate and oxidized organics in climatically important ultrafine particles at a coral reef environment. World Academy of Science, Engineering and Technology, 82: 1-5.

    Verlis, KM; Campbell, ML; Wilson, SP (2013) Ingestion of marine debris plastic by the wedge-tailed shearwater Ardenna pacifica in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 72(1): 244-249.

    Weaver, HJ; Smales, LR (2013) Filisoma filiformis n. sp (Echinorhynchida: Cavisomidae), a new species of Acanthocephala from Kyphosus spp. (Perciformes: Kyphosidae) from the South Pacific, and a key to the genus Filisoma. Comparative Parasitology, 80: 33-38.

    Wei, NWV; Watson, C; Gibb, KS (2013) Phylogenetic and geographic variation of northern Australian sympatric lineages of Treptopale homalos and T. paromolos (Annelida: Phyllodocida: Chrysopetalidae) using mitochondrial and nuclear sequences. Marine Biology Research, 9: 692-702.

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Links to PDFs