Species Databases
Oligonucleotide Primers
RNA Sites
Gene Regulatory Sequences
Vector Database
General Genomics
Human Genome Project
Phylogenetics
Bioinformatics
Species Databases


Caenorhabditis elegans
Chicken Consensus Linkage Map 2000
ECDC Homepage
E.coli Genome Center
GDB (The Genome Database)
The official central repository for genomic mapping data resulting from the Human Genome Initiative
HIV Molecular Immunology Database
HIV Sequence Database
Human Genome Map
Mouse Genome Informatics (MGI)
Mycoplasma genitalium Genome Database
Mycoplasma pneumoniae Genome Project
Picornavirus Sequence Database

Saccharomyces Genome Database
TIGR Microbial Database
A listing of microbial genomes and chromosomes completed and in progress.
The Vibrio cholerae Genome Database


Primers

Oligonucleotide Properties Calculator
    VERY handy little applet that runs from the webpage
Premiere Biosoft International
Primer3
    Have primers picked, from your own sequence, right on the page!
Primers! - a ShareWare Utility
PrimerDesign Home Page
Primer Design
    Javascript applet that runs on your browser!

RNA Sites


Comparative RNA Web Site

Database of non-coding RNAs
Draper Lab: RNA Folding; Protein - RNA Interactions
Ribosomal Database Project (RDP)
RNA Editing Web Site
RNA Modification Database
RNase P Database
5S rRNA Databank Browser
Small RNA Database
snoRNA Database
tmRNA Database
Uridine insertion/deletion RNA Editing Web Site

Gene Regulatory Sequences


Molecular Bioinformatics of Gene Regulation

Regulatory genomic signals and regions, in particular those that govern transcriptional control.
TRANSFAC Database
Compiling data about gene regulatory DNA sequences and protein factors binding to and acting through them.

Vector Databases


The Vector Database

Collections de cultures, matériel biologique
Its French!

General Genomic Stuff


ANGIS
Baylor College of Medicine Search Launcher
NCGR BLAST
CLUSTALW, multiple sequence alignment, Pôle Bio-Informatique Lyonnais
Entrez
WWW Entrez allows you to retrieve molecular biology data and bibliographic citations from the NCBI's integrated databases.
European Molecular Biology Laboratory (EMBL)
The aim of this server is to provide an online information service of activities at EMBL

GenBank
The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences

Gene Map of the Human Genome
This new gene map includes the locations, within this text, of more than 30,000 genes and provides an early glimpse of some of the most important pieces of the genome

MULTALIN, multiple sequence alignment, Pôle Bio-Informatique Lyonnais
Nature's Genome Gateway
Nucleic Acid Database Project
Aims to assemble and distribute structural information about nucleic acids.
PIR International
Integrated Environment for Sequence Analysis

Human Genome Project


UK Human Genome Mapping Project Resource Centre

Phylogenetics

MEGA
Makes useful methods of comparative sequence analysis easily accessible to the scientific community for research and education.
Sequence Format Converison Tool
Software repository
TREE-PUZZLE
Maximum likelihood analysis for nucleotide, amino acid, and two-state data
Methods for the inference of protein phylogeny


Bioinformatic Nodes


EMBL Outstation - European Bioinformatics Institute (EBI)

Hungarian EMBnet
EMBnet Norway
Irish National Centre for BioInformatics
Vienna Biocenter


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Last edited: 20-Jul-2005 20:27