Associate Professor Timothy Bailey - UQ reSEARCHers (Publications)

	Publications

	2012	Expression of nuclear factor one A and -B in the olfactory bulb
	2012	Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq
	2012	Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data
	2012	Identification of molecular compartments and genetic circuitry in the developing mammalian kidney
	2012	An in-depth map of polyadenylation sites in cancer
	2012	Cyclic peptides arising by evolutionary parallelism via asparaginyl-endopeptidasemediated biosynthesis
	2012	Epigenetic priors for identifying active transcription factor binding sites
	2012	Inferring direct DNA binding from ChIP-seq
	2011	Tissue-specific prediction of directly regulated genes
	2011	Inferring transcription factor complexes from ChIP-seq data
	2011	Sorting the nuclear proteome
	2011	DREME: Motif discovery in transcription factor ChIP-seq data
	2011	Improved similarity scores for comparing motifs
	2011	MEME-ChIP: Motif analysis of large DNA datasets
	2011	A probabilistic model of nuclear import of proteins
	2011	Potential in vivo roles of nucleic acid triple-helices
	2011	FIMO: Scanning for occurrences of a given motif
	2010	A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells
	2010	Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster
	2010	Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster
	2010	NFIA controls telencephalic progenitor cell differentiation through repression of the Notch effector Hes1
	2010	The value of position-specific priors in motif discovery using MEME
	2010	A bayesian network model of proteins' association with promyelocytic leukemia (PML) nuclear bodies
	2010	Assigning roles to DNA regulatory motifs using comparative genomics
	2010	Motif Enrichment Analysis: A unified framework and an evaluation on ChIP data
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